Originally Posted by Saturn

Either some option is missing from the configuration file or you are using a them that has it's own transitions.ini file.

If you are not using a special theme then execute this in xterm to load a new transitions.ini file
Note, it will be the default shipped with the new CSSU.

Code:

sudo /opt/CSSUfeatures/updateTransitions copyDefault

If you are using a theme you will need to add manually the missing options in the transitions file.

About the blacklist, I'll wait for it to get stabilised (an update is coming - MAGs words) and in the meantime will think of something to make it easy for me and the users to add/remove programs.