No processes are running when connected to PC, it just sets minimum clock to 500mhz.
it's not a problem now that i know that it is only while connected to PC, which is not a charging method i am using as standard.
it is charging when connected to USB, no errors or anything it just doesn't charge very fast, again referring to USB 2.0/1.0 500mA cap

But i would like to know if anybody out there knows how to edit/change the phones battery reporting system, so a lower battery voltage can be set to the 'Low Battery Warning'
Right now my phone is reporting 17% battery left, but my own battery 'app' says 50%, and it is more accurate because not 1 minute after it says 0% the phone shuts off at the low voltage of 3.3V.

So for everyone out there that's wondering about the 500mhz minimum lock, it's only when connected to PC